Sequencing

Location

OUH Rikshospitalet

Group/Department

Genomics and Metagenomics in Inflammatory Disorders

Scientific Interests/Background

Primary schlerosing cholangitis, Gut microbiota in inflammatory diseases, Autoimmunity

Materials under Investigation

Blood, biopsies and feces from clinical trials

Specifications

Complete pipeline for 16S Fadrosh library preparation

Contact person

Johannes E. R. Hov

Professor

j.e.r.hov@medisin.uio.no

Location

OUH Rikshospitalet

Group/Department

Clinical Microbiology and Microbiota Medicine

Scientific Interests/Background

Cardiovascular disease, Infectious diseases, HIV Immunology, Gut microbiota, Development of biomarkers

Materials under Investigation

Blood, biopsies and feces from clinical trials

Specifications

Complete pipeline for 16S Fadrosh library preparation

Contact person

Marius Trøseid

Associate Professor

troseid@hotmail.com

Location

OUH Ullevål

Group/Department

Norwegian Sequencing Centre

Scientific Interests/Background

Epigenetics and sequencing technologies

Specifications

Sample library prep coordination, troubleshooting & development.

Contact person

Gregor Gilfillan

Researcher

gregorg@medisin.uio.no

Location

Akershus University Hospital

Group/Department

Department of Gastroenterology
Department of Research
Epigen

Scientific Interests/Background

IBSEN III
Resistome research
Antimicrobial resistance
Host-microbiome
Treatment escalation

Specifications

Mucosal microbiota - 16S rRNA gene and transcript amplicon sequencing
In collaboration with Knut Rudi: Reduced Metagenome Sequencing (RMS)
RNA sequencing
Whole genome sequencing
Panel sequencing
Bisulfite sequencing
Sequencing platforms: MiSeq, Ion S5 and PyroMark Q48

Contact person

Petr Ricanek

Senior Consultant

petr.ricanek@medisin.uio.no

Location

Norwegian University of Life Sciences, NMBU

Group/Department

Department of Food Safety and Infection Biology
MiDiv Lab

Scientific Interests/Background

Bioinformatics
Statistics
Imaging

Specifications

Reduced Metagenome Sequencing (RMS)
16S sequencing

Contact person

Knut Rudi

Professor

knut.rudi@nmbu.no

Location

Cancer Registry of Norway

Group/Department

Department of Research

Scientific Interests/Background

Development of biomarkers for early detection of colon cancer

Specifications

Large scale sequencing
16S sequencing
Metagenome sequencing

Contact person

Trine Rounge

Researcher

trine.rounge@kreftregisteret.no

Location

Norwegian Institute for Public Health

Group/Department

Environmental Exposure and Epidemiology

Materials under Investigation

Fecal samples

Contact person

Merete Eggesbø

Senior Researcher

merete.eggesbo@fhi.no

Location

University of Oslo

Group/Department

Centre for Ecological and Evolutionary Synthesis

Scientific Interests/Background

Microbial ecology of several systems

Materials under Investigation

Feces
Tissue
Soil
Water
Experimental samples

Specifications

Marker gene sequencing with Illumina
PacBio applications
Shotgun metagenomics

Contact person

Pål Trosvik

Researcher

pal.trosvik@ibv.uio.no